Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRP | rs147042258 | chr16:4530885 | T/C | 3.38E-6 | 214 | 16.45 | 12.63 | 10.83 | KM Plot |
KIRP | rs147126010 | chr14:59868764 | T/G | 0.000111 | 213 | 16.43 | 16.53 | 6.63 | KM Plot |
KIRP | rs147206898 | chr16:19850466 | AATTT/A | 5.81E-5 | 213 | 15.08 | 16.93 | 15.58 | KM Plot |
KIRP | rs147208676 | chr11:34782989 | C/T | 0 | 212 | 15.88 | 16.72 | 3.83 | KM Plot |
KIRP | rs147236609 | chr12:108942770 | GT/G | 0.000472 | 211 | 16.5 | 13.2 | 11.43 | KM Plot |
KIRP | rs147278753 | chr15:24504001 | A/G | 0.00045 | 213 | 17 | 14.8 | 9.48 | KM Plot |
KIRP | rs147468572 | chr1:48780429 | G/A | 3.49E-7 | 213 | 14.85 | 19.87 | 11.03 | KM Plot |
KIRP | rs147552833 | chr19:42543452 | C/A | 0.000314 | 214 | 15.1 | 17 | 11.2 | KM Plot |
KIRP | rs147649409 | chr19:42562481 | C/T | 0.000314 | 214 | 15.1 | 17 | 11.2 | KM Plot |
KIRP | rs1478834 | chr5:79949575 | C/A | 0.000105 | 214 | 18.65 | 14.83 | 9.77 | KM Plot |
KIRP | rs1478835 | chr5:79949600 | C/T | 0.000105 | 214 | 18.65 | 14.83 | 9.77 | KM Plot |
KIRP | rs147913010 | chr5:79921897 | TAACA/T | 4.44E-5 | 211 | 18.65 | 14.4 | 9.77 | KM Plot |
KIRP | rs147916079 | chr14:23723497 | AAAAC/A | 5.87E-5 | 207 | 14.87 | 18.47 | 16.53 | KM Plot |
KIRP | rs148029290 | chr10:26948950 | T/TTTTTTTG | 2.76E-5 | 204 | 17.2 | 13.8 | 13.98 | KM Plot |
KIRP | rs148082388 | chr6:28713118 | G/GAC | 4.13E-7 | 206 | 16.45 | 6.9 | 9.77 | KM Plot |